tacg Commandline app for Restriction Enzyme and Transcription Factor analysis and mapping. New in Version 2 is: multiple degenerate pattern matching *with* errors, handling and matching degenerate input sequence, proximity matching of patterns (ie. report if siteA is < 200b from siteB) Open Reading Frame analysis and export of data for use with external plotting/analysis tools more features, bug fixes, robustness. a whole new set of bugs ;) The Web cgi (tacgi) has not yet been updated for version 2 but should be available soon.

Current Version:   2.28 License Type:   Free as written for profit and nonprofit uses. Incorporation of code into commercial software requires author's written permission.

Home Site: http://hornet.bio.uci.edu/~hjm/projects/tacg/tacg2.main.html Source Code Availability:   Yes, ftp://mamba.bio.uci.edu/pub/tacg/ Available Binary Packages: Debian Package:   No RedHat RPM Package:   No Other Packages:   Yes (also binaries for Silicon Graphics/IRIX 5.x, Solaris, HP-UX, DEC-UNIX) Targeted Platforms: Silicon Graphics/IRIX 5.3 (R3000, R4X00, R5000) Sun SPARC/SunOS (5.3, 4.1.3) DEC Alpha/DEC Unix aka OSF/1 (V3.0/347) DECStations (MIPS R3000-based)/Ultrix (4.2) Convex C3480/ConvexOS NeXT boxes (Black)/NeXTSTEP (3.2) and especially Intel PCs running Linux (1.2.8(486), 2.0.0 (586)), 2.0.28 (PPro) Software/Hardware Requirements: ANSI C Compiler (gcc is fine), recent math libs

Other Links: ftp://mamba.bio.uci.edu/pub/tacg (FTP site) Mailing Lists/USENET News Groups: New versions announced to bionet.software and comp.os.linux.announce User Comments: None See A Screen Shot? Check out the Home Site for various outputs.

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