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SeqPup is a biological sequence editor and analysis program. It includes links to network services and external analysis programs. Features include:

  • multiple sequence alignment and single sequence editors
  • read and write several sequence file formats
  • easy hand alignment features including colored bases and sliding
  • Internet sequence analysis services by BOP and email methods
  • automatic multiple sequence alignment with ClustalW app
  • automatic gel fragment alignment to contigs with CAP app
  • automatic base calling from ABI or SCF trace files with autoseq app
  • phylogenetic analysis of alignments with fastDNAml and LSADT apps
  • consensus, reverse, complement, degap, and distance/similarity operations
  • restriction maps
  • pretty print of alignments and sequences with boxed and shaded regions.
  • translate dna to/from protein using various codon tables
  • find strings and ORFs
  • automatic preference saving
  • user-definable links to external analysis programs

Current Version:   0.6

License Type:   Free

Home Site:

Source Code Availability:   Yes

Available Binary Packages:

  • Debian Package:   No
  • RedHat RPM Package:   No
  • Other Packages:   Yes (see Home Page)

Targeted Platforms:

Macintosh (PowerMac and 68K), MS Windows (Win95, WinNT and Win3), and Unix/XWindows systems including Sun Solaris, SGI Irix, DEC Unix, Linux.

Software/Hardware Requirements:


Other Links:

Mailing Lists/USENET News Groups:


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