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PomBase

The S. pombe ACEdb database PomBase merges the annotated genomic sequence data with maps, genetics and bibliographic information.

PomBase now includes:

  • PHYSICAL MAPS -- EUPOM physical maps showing the production status of cosmids undergoing sequencing.
  • GENETIC MAPS
  • DNA SEQUENCES -- 9712 S. pombe DNA sequences from EMBL and EMNEW, including 286 systematically sequenced cosmids and the new est data from Mitsuoki Morimyo.
  • PAPERS -- 5114 paper references, including abstracts
  • PROTEIN RECORDS -- ~3700 full text records of S. pombe proteins from SWISSPROT and TREMBL
  • GENE DESIGNATIONS -- ~3613 gene predictions from the sequencing project
  • LOCI -- ~5413 loci and/or Synonyms

Current Version:   4.6

License Type:   ??

Home Site:
http://www.sanger.ac.uk/Projects/S_pombe/Pombase.shtml

Source Code Availability:   Yes

Available Binary Packages:

  • Debian Package:   No
  • RedHat RPM Package:   No
  • Other Packages:   No

Targeted Platforms:

UNIX/X11 (IBM, SGI, DEC, SUN, Linux)

Software/Hardware Requirements:

None

Other Links:
ftp://ftp.sanger.ac.uk/pub/PomBase/ (FTP site)

Mailing Lists/USENET News Groups:

None

User Comments:

  • None

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