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autoseq is a small package of base calling software for ABI automated DNA sequencers. It is intended as a starting point for researchers interested in new base calling algorithms. It implements a simple Bayesian peak identification algorithm which is experimental and does not generally perform better than software provided by ABI.

autoseq is written in C++. The package includes C++ classes which represent ABI trace files, individual traces, and lists of picked peaks.

Current Version:   1.1

License Type:   Public Domain

Home Site:

Source Code Availability:   Yes (from Home Site)

Available Binary Packages:

  • Debian Package:   No
  • RedHat RPM Package:   No
  • Other Packages:   No

Targeted Platforms:

Linux, Unix; others untested

Software/Hardware Requirements:

C++ compiler (known to compile with g++

Other Links:

Mailing Lists/USENET News Groups:


User Comments:

  • This code is no longer being developed. However, the author (Reece) will be happy to incorporate code and documentation submissions.

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